Evaluating query. Traceback (most recent call last): File "/usr/local/bin/zoo", line 11, in <module> load_entry_point('zoo==0.3', 'console_scripts', 'zoo')() File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 722, in __call__ return self.main(*args, **kwargs) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 697, in main rv = self.invoke(ctx) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 1066, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 895, in invoke return ctx.invoke(self.callback, **ctx.params) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 535, in invoke return callback(*args, **kwargs) File "/usr/local/lib/python3.4/dist-packages/zoo/cli/io.py", line 164, in dump lines = '>{}\n{}\n'.format(header, rec['seq']) KeyError: 'seq'
in Cell aber sequence eingetragen
falsche Selektion benennung
$zoo dump --client 'mongo:27017' --db testdb --cell 'InfluenzaPA' --query /usr/src/temp/q.json --selection _id,seq--fmt fasta '/usr/src/temp/dump.fasta'Evaluating query. Traceback (most recent call last): File "/usr/local/bin/zoo", line 11, in <module> load_entry_point('zoo==0.3', 'console_scripts', 'zoo')() File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 722, in __call__ return self.main(*args, **kwargs) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 697, in main rv = self.invoke(ctx) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 1066, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 895, in invoke return ctx.invoke(self.callback, **ctx.params) File "/usr/local/lib/python3.4/dist-packages/click/core.py", line 535, in invoke return callback(*args, **kwargs) File "/usr/local/lib/python3.4/dist-packages/zoo/cli/io.py", line 164, in dump lines = '>{}\n{}\n'.format(header, rec['seq']) KeyError: 'seq'in Cell aber sequence eingetragen