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phiweger / zoo

A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).
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integrate GLUE MSA traversal #3

Closed phiweger closed 7 years ago

phiweger commented 7 years ago

http://tools.glue.cvr.ac.uk/#/home

phiweger commented 7 years ago

Replace this functionality w/ gap encode/ decode functions in align.py and storage of the "gap dict" as a sequence derivative, together with an identifier of the MSA. That way it is easy to store multiple MSAs for a given sequence, thereby enabling the "phylogenetic traversal" of a given virus branch with multiple MSAs.

phiweger commented 7 years ago

see #27 and #29