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phiweger / zoo

A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).
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zoo load --ncbi accessions.txt | zoo init --db x --cell y | zoo dump --tofasta ... #78

Open phiweger opened 7 years ago

phiweger commented 7 years ago

avoids saving io result to disk but streams it directly into database

phiweger commented 7 years ago

Also, the design principles of zoo dictate that zoo load and zoo init are separated command, i.e. no direct loading to database. This is because only init, add and commit are meant to later perform validity checks. It'll just get too confusing if shortcuts like "load to database" are allowed, better to be explicit about that.

see #64