hotfix/container mapping fixes

phnmnl / container-galaxy-k8s-runtime

PhenoMeNal runtime for Galaxy running inside a container orchestrator

Apache License 2.0

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hotfix/container mapping fixes #247

Closed djcomlab closed 6 years ago

djcomlab commented 6 years ago

Fixes to container mappings that fail on isacreate_metabo and mtbls-labs-uploader tools.

ilveroluca commented 6 years ago

@pcm32 do you have an idea regarding what might be causing this problem?

michaelvanvliet commented 6 years ago

@djcomlab I think this PR will fix the issue you had. @ilveroluca discovered an error with the file phenomenal_tools2container.yaml , which was still valid yaml, but wasn't structured properly to be parsed by the k8s_destinations.py script to determine the correct resource requirements. https://github.com/phnmnl/container-galaxy-k8s-runtime/pull/249

ilveroluca commented 6 years ago

Closing this PR unmerged. The tool/container configuration file has been fixed in PR #249