Closed djcomlab closed 6 years ago
I tested it just now and can confirm I can get the tool to load and run correctly without any errors in minikube using the release/v18.01-dalcotidine
branch.
Can you try again @djcomlab?
Tried just now but still the same error. Does it work for you on publicdev?
On Wed, 11 Jul 2018 at 08:44, Luca Pireddu notifications@github.com wrote:
Can you try again @djcomlab https://github.com/djcomlab?
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Just started looking into this. The galaxy logs show the following backtrace when I try to open the tool:
galaxy.web.framework.decorators ERROR 2018-07-13 09:04:05,968 [p:157,w:1,m:0] [uWSGIWorker1Core1] Uncaught exception in exposed API method:
Traceback (most recent call last):
File "lib/galaxy/web/framework/decorators.py", line 281, in decorator
rval = func(self, trans, *args, **kwargs)
File "lib/galaxy/webapps/galaxy/api/tools.py", line 99, in build
return tool.to_json(trans, kwd.get('inputs', kwd))
File "lib/galaxy/tools/__init__.py", line 1829, in to_json
populate_state(request_context, self.inputs, params.__dict__, state_inputs, state_errors)
File "lib/galaxy/tools/parameters/__init__.py", line 316, in populate_state
state[input.name] = input.get_initial_value(request_context, context)
File "lib/galaxy/tools/parameters/grouping.py", line 181, in get_initial_value
rval[child_input.name] = child_input.get_initial_value(trans, child_context)
File "lib/galaxy/tools/parameters/basic.py", line 907, in get_initial_value
value = [optval for _, optval, selected in options if selected]
ValueError: need more than 1 value to unpack
The tool xml doesn't generate any errors when it's loaded.
As discussed on Slack, looks like the error is with the Galaxy runtime image missing tool-data/isa_cvterms.loc
that the ISA Create tool relies on for controlled vocabulary.
Fixed in release branch.
isacreate_metabo tool does not load on publidev giving
Uncaught exception in exposed API method: