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photocyte / PPYR_OGS

Official Geneset (OGS) for Photinus pyralis, at least until I figure out a long term alternative
MIT License
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Catalog natural variation #5

Open photocyte opened 6 years ago

photocyte commented 6 years ago

While in a lot of regions P. pyralis has low variation, I've definitely run into some situations where the gene I've cloned has coding differences from the reference, and it is unclear to me if these coding differences are natural variants or PCR/cloning induced mutations.

Having a catalog of all the natural variation in our numerous RNA-Seq & Genomic seq datasets would be a useful contribution to the OGS.

photocyte commented 6 years ago

Ran into with this PPYR_09240-PA. The alternate allele from SRR6345449 is the one I keep running into with cDNA cloning.