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phylogeography / SpreaD3

Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
GNU Lesser General Public License v3.0
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Rendering problem to directory name containing underscore in Windows 10 #24

Open GuyBaele opened 8 years ago

GuyBaele commented 8 years ago

Error occurred during a continuous phylogeography spreaD3 analysis. When 'Render to D3' is performed and a name containing an underscore is entered, the following error message appears:

c:\Users\MK\Downloads>java -jar spreaD3_v0.9.6.jar MRSD is in yyyy/MM/dd format : 2016/7/22 Parsed time line Parsed the tree Parsed tree attributes Parsed map attributes Created JSON file Unexpected problem on thread SwingWorker-pool-2-thread-4: C:\Users\MK\Documents\SISMID\continuousPhylogeography\WNT_output4\renderers\d3\d3renderer\index.html (The system cannot find the path specified) Stack trace: java.io.FileNotFoundException: C:\Users\MK\Documents\SISMID\continuousPhylogeography\WNT_output4\renderers\d3\d3renderer\index.html (The system cannot find the path specified) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(Unknown Source) at java.io.FileOutputStream.(Unknown Source) at java.io.FileOutputStream.(Unknown Source) at renderers.d3.D3Renderer.render(Unknown Source) at gui.panels.D3RenderPanel$1.doInBackground(Unknown Source) at gui.panels.D3RenderPanel$1.doInBackground(Unknown Source) at javax.swing.SwingWorker$1.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at javax.swing.SwingWorker.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source)

GuyBaele commented 8 years ago

We should also check (what to do with) other special characters, such as spaces, %, &, ...

kikiyang commented 7 years ago

The error also occurred in Windows 7 when filename containing an underscore.