Instructions on how to use the two implemented commands (jphyloref test and jphyloref webserver) and their command line arguments
Instructions on using this with the Curation Tool and the Clade Ontology.
Document the reasoners we currently support and how to add new reasoners
Include a link to our Travis CI repository here, i.e. [](https://travis-ci.org/phyloref/jphyloref)
We should update the README with:
jphyloref testandjphyloref webserver) and their command line arguments[](https://travis-ci.org/phyloref/jphyloref)