Improvements made in response to JOSS reviewer suggestions

phyloref / jphyloref

MIT License

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Closed gaurav closed 3 years ago

gaurav commented 3 years ago

This PR collects improvements made in response to JOSS reviewer suggestions. This includes:

A note about the JAVA_HOME environment variable. Closes #81.
Cleaned up dependencies, removing overlapped JARs in the final output shaded JAR. Closes #82.