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phyloref / phylo2owl

Tool to convert phylogenies to OWL ontologies
MIT License
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Add tests for non-tree phylogenetic networks #12

Open gaurav opened 8 years ago

gaurav commented 8 years ago

phylo2owl.py currently writes out all the nodes found in the input tree file so it should work with phylogenetic networks that aren't trees if DendroPy can parse them. If this is a necessary feature, we should add tests for this.

Requires #11, since I don't think DendroPy supports reticulate networks in Newick or Nexus, and I'm not sure if it supports it in NeXML.

hlapp commented 8 years ago

I agree this is lower priority, until we start validating against use-cases that require this.