Recent versions of JFact (I've tested 4.x and 5.x) cannot reason over the Phyloreferencing ontology. I reported this to JFact last October, and was told that the reasoning error was because of a property chain axiom in excludes_lineage_to that is invalid (https://github.com/owlcs/jfact/issues/19#issuecomment-336639215).
This isn't holding up development for now, since the ontology reasons fine in JFact 1.2.4, but fixing this might help us speed up reasoning with more advanced reasoners.
Recent versions of JFact (I've tested 4.x and 5.x) cannot reason over the Phyloreferencing ontology. I reported this to JFact last October, and was told that the reasoning error was because of a property chain axiom in
excludes_lineage_to
that is invalid (https://github.com/owlcs/jfact/issues/19#issuecomment-336639215).This isn't holding up development for now, since the ontology reasons fine in JFact 1.2.4, but fixing this might help us speed up reasoning with more advanced reasoners.