An object property for associating an internal specifier with a phyloreference

phyloref / phyloref-ontology

Phyloreferencing Ontology and OWL DL reasoning with phyloreferences

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An object property for associating an internal specifier with a phyloreference #7

Closed gaurav closed 5 years ago

gaurav commented 6 years ago

Proposed term: has_internal_specifier (object property) Definition: Associates an internal specifier with a phyloreference. Domain: Phyloreference Range: Specifier See also: scratch ontology, PHYX context

Competency questions:

Which specifiers does a particular phyloreference have that should be included in the denoted clade.
Does a particular phyloreference have any specifiers that are to be included in the clade?

On hold until we resolve https://github.com/phyloref/phyloref-ontology/issues/8#issuecomment-391907602

hlapp commented 6 years ago

See comment on #8 re: supporting competency question(s).

hlapp commented 6 years ago

See other comment on #8, which applies here too. Including in particular my skepticism about there being no superproperty.

gaurav commented 6 years ago

On hold until we resolve https://github.com/phyloref/phyloref-ontology/issues/8#issuecomment-391907602

hlapp commented 5 years ago

In light of the conclusion from recent discussions that at least for purposes of phylogenetic clade definitions there is no discernible difference between a specifier and a referent to a taxon concept, this should be closed. See also https://github.com/phyloref/phyloref-ontology/issues/8#issuecomment-448387121.

Also, #29 introduces and proposes phyloref:includes_TU for signifying a TU to be included in a clade.

gaurav commented 5 years ago

Agreed: phyloref:includes_TU is pretty much exactly what this issue was going for! Closing.