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phylotastic / datelife

R package containing datelife's core functionality
http://phylotastic.org/datelife/
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No species found in homo #86

Open snacktavish opened 9 months ago

snacktavish commented 9 months ago 
new_q<-datelife::make_datelife_query(input="homo", get_spp_from_taxon = TRUE)

Doesn't find any species!

bomeara commented 5 months ago

https://tree.opentreeoflife.org/curator/study/edit/pg_2656/?tab=home should be pulled in as it has homo

LunaSare commented 4 months ago

Oh, I think it is because they are all extinct or subspecies in the OpenTree synth tree. That's the criterion used in the get_spp_from_taxon flag. Should we add a flag that keep extinct? And one for subspecies?

bomeara commented 4 months ago

yes on extinct. Odd about subspecies -- I think part of the problem is OToL has no homo sapiens at all, just the subspecies. This feels like a flaw in OToL, though.