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phylotastic
/
datelife
R package containing datelife's core functionality
http://phylotastic.org/datelife/
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install packages with datelife
#46
LunaSare
closed
6 years ago
2
Export total time in tree
#45
bomeara
opened
6 years ago
0
Recommend tree
#44
bomeara
opened
6 years ago
0
Convert rphylotastic fns to match new names
#43
bomeara
closed
6 years ago
1
Fix negative branch lengths inside GetBoldOToLTree function
#42
LunaSare
opened
6 years ago
0
adopt ropensci style for datelife
#41
LunaSare
closed
6 years ago
1
make datelife_results object
#40
LunaSare
closed
8 months ago
0
query of >250 spp names not supported by rotl::tnrs_match_names fn
#39
LunaSare
closed
6 years ago
1
install mrBayes with datelife
#38
LunaSare
opened
6 years ago
1
allow different dating methods in GetBoldOToLTree function
#37
LunaSare
opened
6 years ago
0
add dating with treePL as an alternative to PATHd8
#36
LunaSare
closed
5 years ago
3
Unable to scale tree for Red Lion fish list from wikipedia
#35
ducvan0212
opened
6 years ago
2
shut up, geiger
#34
bomeara
opened
6 years ago
0
Include tree name (esp in case of multiple returned trees per study)
#33
bomeara
opened
6 years ago
0
Show matching chronograms with only 2 species when output is in the appropriate format
#32
LunaSare
closed
6 years ago
1
allow multiple markers in GetBoldOToLTree
#31
LunaSare
opened
6 years ago
1
Implement other methods for congruification
#30
LunaSare
opened
6 years ago
1
Dating with MrBayes
#29
LunaSare
closed
6 years ago
1
Allow clade names as input
#28
LunaSare
closed
6 years ago
0
Make up missing taxa branch lengths with bd with our own function
#27
LunaSare
opened
6 years ago
1
Making up missing taxa branch lengths under bd with pastis and mrbayes
#26
LunaSare
closed
6 years ago
1
Making up missing taxa branch lengths with congruify
#25
LunaSare
opened
6 years ago
0
Get info for named taxon
#24
bomeara
opened
6 years ago
0
indicate in the output which species are not found in opentree chronograms
#23
LunaSare
closed
6 years ago
4
choose longer bold sequences, not first ones in list
#22
LunaSare
closed
6 years ago
1
allow users to input species names with spaces or underscores between names
#21
LunaSare
opened
7 years ago
4
update opentree_chronograms cache
#20
LunaSare
closed
6 years ago
0
describe each output.format on EstimateDates function
#19
LunaSare
closed
6 years ago
0
Pull in dates from paleoDB or similar
#18
bomeara
opened
7 years ago
2
Create DB of fossil calibrations
#17
bomeara
opened
7 years ago
1
Go Bayesian
#16
bomeara
opened
7 years ago
0
Compare a given tree with datelife tree
#15
bomeara
opened
7 years ago
0
Autopull with new opentree submissions
#14
bomeara
opened
7 years ago
0
Add taxa w/o brlen
#13
bomeara
closed
6 years ago
2
Keep node labels
#12
bomeara
closed
6 years ago
2
Negative brlen in returned tree
#11
bomeara
closed
6 years ago
1
broken links on main page?
#10
arlin
closed
6 years ago
1
Datelife not using all OToL trees
#9
hdliv
closed
6 years ago
4
ProcessResultsList deal with taxa=NULL
#8
bomeara
closed
7 years ago
1
Fix pulling from OToL
#7
bomeara
closed
7 years ago
2
Auto-updating chronogram for life (using opentree synthetic tree + chronograms)
#6
bomeara
opened
8 years ago
0
Create function to automatically bind the chronogram patristic matrices
#5
bomeara
opened
8 years ago
0
Add measurement of unit testing coverage
#4
bomeara
closed
6 years ago
2
Add unit testing
#3
bomeara
closed
7 years ago
8
Clean up OToL human names
#2
bomeara
opened
8 years ago
0
Output format json
#1
bomeara
opened
8 years ago
0
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