Account for breaking CLI extension API changes

[maxrake]

The CLI extension API introduced breaking changes in phylum-dev/cli#1310. These changes are expected in a v6.0.0 release:

• Renamed parseLockfile to PhylumApi::parseDependencyFile
• Removed lockfile field from PhylumApi::Package type
• Removed PhylumApi::Lockfile type in favor of PhylumApi::DependencyFile
• Changed PhylumApi::analyze packages type to PhylumApi::PackageWithOrigin

Update the extensions to account for those changes after the CLI release is made. There may be more, but known changes include:

• sbom extension
  • change parseLockfile call to parseDependencyFile
  • update analyze argument types
  • NOTE: it appears this extension was not updated after the last breaking change, for CLI v5.0.0, and should be made current throughout
• build-gradle extension
  • update analyze argument types

[maxrake]

This issue will likely be OBE if/once #30 and #31 are approved/merged.

[maxrake]

This issue is OBE.