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pianpianyouche / plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
https://github.com/pianpianyouche/plascad
MIT License
45 stars 11 forks source link

Something wrong with running example #1

Closed galstriker closed 4 years ago

galstriker commented 4 years ago

Hi, @pianpianyouche I found this software and I couldn't help trying it. I installed this software using conda. However, when I ran with the example fasta file, it reported that something was wrong:

 Error: Sequence file /mnt/d/test2/example_MOB_temp_mob.faa is empty or misformatted

cat: '*ATPase.hmm_domtblout_parsed_out': No such file or directory
cat: '*T4CP*_domtblout_parsed_out': No such file or directory
cat: '/mnt/d/test2/example*MPFF*_result_out': No such file or directory
cat: '/mnt/d/test2/example*MPFG*_result_out': No such file or directory
cat: '/mnt/d/test2/example*MPFI*_result_out': No such file or directory
cat: '/mnt/d/test2/example*MPFT*_result_out': No such file or directory
Warning: [blastp] Number of threads was reduced to 8 to match the number of available CPUs

I updated the software with conda but the issue was still there. Could you help me? Thanks.

pianpianyouche commented 4 years ago

Hi galstriker, I think I find the problem, please run "Plascad" in the "example.fasta" directory. I will fix this problem ASAP. Thank you!