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pierrepo / PBxplore

A suite of tools to explore protein structures with Protein Blocks :snake:
https://pbxplore.readthedocs.org/en/latest/
MIT License
28 stars 17 forks source link

Missing progress in MD trajectory PBs assignment #150

Closed pierrepo closed 7 years ago

pierrepo commented 7 years ago

Previously, we could see the progress of PBs assignment for MD trajectory:

$ PBassign -x `PBdata`/md_traj_4.xtc -g `PBdata`/md_traj_4.gro -o md_traj_4
PBs assigned for demo/md.xtc | frame 1
PBs assigned for demo/md.xtc | frame 2
PBs assigned for demo/md.xtc | frame 3
PBs assigned for demo/md.xtc | frame 4
...
PBs assigned for demo/md.xtc | frame 198
PBs assigned for demo/md.xtc | frame 199
PBs assigned for demo/md.xtc | frame 200
PBs assigned for demo/md.xtc | frame 201
wrote md_traj_4.PB.fasta

This is no longer possible: 

$ PBassign -x `PBdata`/md_traj_4.xtc -g `PBdata`/md_traj_4.gro -o md_traj_4
wrote md_traj_4.PB.fasta

Could we revert it back?

HubLot commented 7 years ago

closed #151