search

pierrepo / PBxplore

A suite of tools to explore protein structures with Protein Blocks :snake:
https://pbxplore.readthedocs.org/en/latest/
MIT License
28 stars 17 forks source link

run_demo2.sh calls PBstat with wrong input files #2

Closed jbarnoud closed 11 years ago

jbarnoud commented 11 years ago

run_demo2.sh calls PBstat with a fasta file as input file while PBstat expects a count file. This commit fix the calls to PBstat in run_demo2.sh. It also create demo2/mdtraj{1,2,3}.PB.count. These files have been generated with:

cd demo2
../PBcount.py -f md_traj_1.PB.fasta -o md_traj_1
../PBcount.py -f md_traj_2.PB.fasta -o md_traj_2
../PBcount.py -f md_traj_3.PB.fasta -o md_traj_3

Notice that the demo still does not complete because of issue #1.

This commit also small typos in run_demo2.sh.