As repported by @sleonard0386 in issue #37, the commands displayed on the terminal and the commands that are actually run by run_demo1.sh are not consistent with each other.
This pull request update demo 1 so as the displayed command match what is actually run.
For the demo of PBassign working on a full directory, the displayed command was correct rather than the run one. Indeed, demo 1 used the -d argument for PBassign to assign PB to all the files in a directory. This option does not exist. Instead, the -p option should be used; if the path given to PBassign with -p is a directory, then PBassign will work on all PDB and mmcif files in that directory.
As repported by @sleonard0386 in issue #37, the commands displayed on the terminal and the commands that are actually run by run_demo1.sh are not consistent with each other.
This pull request update demo 1 so as the displayed command match what is actually run.
For the demo of PBassign working on a full directory, the displayed command was correct rather than the run one. Indeed, demo 1 used the
-dargument for PBassign to assign PB to all the files in a directory. This option does not exist. Instead, the-poption should be used; if the path given to PBassign with-pis a directory, then PBassign will work on all PDB and mmcif files in that directory.Fix #37