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pierrepo / PBxplore

A suite of tools to explore protein structures with Protein Blocks :snake:
https://pbxplore.readthedocs.org/en/latest/
MIT License
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Issue with PBclust.py in run_demo2.sh #57

Closed HubLot closed 9 years ago

HubLot commented 9 years ago

In the run_demo2.sh script, there is an issue at the PBclust part:

#------------------------------------------------------------------------#
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|  Cluster structures                                                    |
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#------------------------------------------------------------------------#

../PBclust.py -f psi_md_traj_all.PB.fasta -o psi_md_traj_all
Press any key to continue.
usage: PBclust.py [-h] -f F -o O -c C [--compare]
PBclust.py: error: argument -c is required

It's because the number of cluster is now mandatory in PBclust.py (see #45) but it was not been updated in the run_demo script.

From what I have seen in the regression tests, the default number used with these inputs are 3. I can make PR to fix that.

jbarnoud commented 9 years ago

Fix by @HubLot with PR #58.