Extracting total non-synonymous and synonymous sites per alignment

pievos101 / PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses in R

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Extracting total non-synonymous and synonymous sites per alignment #1

Open jckhearn opened 5 years ago

jckhearn commented 5 years ago

Hi @pievos101

Is it possible to extract the total number of predicted non-synonymous and synonymous sites from a "GENOME" object created from on an in frame fasta alignment? I can get SNPs of either category but not invariant sites.

I've sent a question through your weebly site also, sorry for the duplication.

Best wishes, Jack