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pik-copan / pyunicorn

Unified Complex Network and Recurrence Analysis Toolbox
http://pik-potsdam.de/~donges/pyunicorn/
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`setup.py` missing in pip install #158

Closed haricash closed 2 years ago

haricash commented 2 years ago

Hello! I am trying out pyunicorn on Google Colab and I ran into the following error when I tried !pip install followed by import pyunicorn :

`ModuleNotFoundError Traceback (most recent call last)

in () 1 get_ipython().system('pip3 install pyunicorn') ----> 2 import pyunicorn

/usr/local/lib/python3.7/dist-packages/pyunicorn/init.py in () 41 import sys 42 ---> 43 from setup import version 44 45 from .utils import mpi

ModuleNotFoundError: No module named 'setup'`

It would be great if you could help me out in this issue!

ntfrgl commented 2 years ago

Thank you for reporting this issue, and please accept our apologies for our delay in providing a rigorous solution. This set of problems should be fully resolved with the commit linked above, which will be reflected in an upcoming new release including official wheels. I'm tentatively closing this ticket, but please let us know in case you have any trouble installing pyunicorn from the current master branch, in which case we will attempt to find a solution as quickly as possible.

Cython is now declared as a build dependency, which means that your Python package manager (e.g., pip) is responsible for automatically providing the Cython compiler without any user intervention. After the package installation process is completed, Cython is not required as a runtime dependency. The version information is now retrieved via importlib.metadata from the Python standard library.

haricash commented 2 years ago

Thank you for your response. I managed to install it locally on my system after some fooling around.

I wanted to quickly add a follow up- there is a segfault in the mutual information calculation function. Hopefully that is getting fixed too!

Also, when can we expect the next release? I'm using it for a project with a deadline, and hopefully it comes up within the next few days.

On Fri, 8 Apr 2022, 11:02 Boyan Beronov, @.***> wrote:

Thank you for reporting this issue, and please accept our apologies for our delay in providing a rigorous solution. This set of problems should be fully resolved with the commit linked above, which will be reflected in an upcoming new release including official wheels. I'm tentatively closing this ticket, but please let us know in case you have any trouble installing pyunicorn from the current master branch, in which case we will attempt to find a solution as quickly as possible.

Cython is now declared as a build dependency, which means that your Python package manager (e.g., pip) is responsible for automatically providing the Cython compiler without any user intervention. After the package installation process is completed, Cython is not required as a runtime dependency. The version information is now retrieved via importlib.metadata from the Python standard library.

— Reply to this email directly, view it on GitHub https://github.com/pik-copan/pyunicorn/issues/158#issuecomment-1092457303, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO75BTIOB7UPAVJZUXOTXFLVD7AGXANCNFSM5RW6X7UA . You are receiving this because you authored the thread.Message ID: @.***>

ntfrgl commented 2 years ago

The release date is not up to me, but I wouldn't bet on it happening within a few days.

Please try to run your code with the current master, and in case the segmentation fault persists, open a separate issue with a reproducible example.

haricash commented 2 years ago

Will do, thanks!

On Fri, 8 Apr 2022, 11:20 Boyan Beronov, @.***> wrote:

The release date is not up to me, but I wouldn't bet on it happening within a few days.

Please try to run your code with the current master, and in case the segmentation fault persists, open a separate issue with a reproducible example.

— Reply to this email directly, view it on GitHub https://github.com/pik-copan/pyunicorn/issues/158#issuecomment-1092464946, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO75BTPHD4ZTZVDO2FLIBI3VD7CJHANCNFSM5RW6X7UA . You are receiving this because you authored the thread.Message ID: @.***>

haricash commented 2 years ago

Hello, Is there an alternative to using PyNGL being planned in the next release? PyNGL has gone into maintenance mode and a lot of plotting functionalities are not currently being supported.

On Fri, Apr 8, 2022 at 11:51 AM Arun Ravi < @.***> wrote:

Will do, thanks!

On Fri, 8 Apr 2022, 11:20 Boyan Beronov, @.***> wrote:

The release date is not up to me, but I wouldn't bet on it happening within a few days.

Please try to run your code with the current master, and in case the segmentation fault persists, open a separate issue with a reproducible example.

— Reply to this email directly, view it on GitHub https://github.com/pik-copan/pyunicorn/issues/158#issuecomment-1092464946, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO75BTPHD4ZTZVDO2FLIBI3VD7CJHANCNFSM5RW6X7UA . You are receiving this because you authored the thread.Message ID: @.***>