Open barracuda156 opened 1 year ago
Ok, I have tried 6.10.1 (latest commit from master), and it still fails:
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
▆
1. ├─testthat::expect_silent(a <- read.magpie(f1)) at test-readwritemagpie.R:65:2
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─magclass::read.magpie(f1)
10. └─magclass:::readMagpieMZ(fileName, compressed = (fileType == "mz"))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 735 ]
Error: Test failures
Execution halted
@pik-piam Any update on the issue? A few tests still fail:
R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: powerpc-apple-darwin10.0.0d2 (32-bit)
> library(testthat)
> library(magclass)
>
> test_check("magclass")
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 740 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-readwritemagpie.R:65:3'): read supports older formats ──────────
Error in `readMagpieMZ(fileName, compressed = (fileType == "mz"))`: File format is newer (v1024) than the formats supported (v1-v6).
Please update your magclass package to the newest version!
Backtrace:
▆
1. ├─testthat::expect_silent(a <- read.magpie(f1)) at test-readwritemagpie.R:65:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─magclass::read.magpie(f1)
10. └─magclass:::readMagpieMZ(fileName, compressed = (fileType == "mz"))
── Failure ('test-readwritemagpie.R:87:3'): handling of spatial data works ─────
Expected `write.magpie(m10, file.path(td, "test.nc"))` to run without any warnings.
ℹ Actually got a <simpleWarning> with text:
GDAL Error 4: `/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-magclass/R-magclass/work/.tmp/RtmpZYFqNa/test.nc' not recognized as a supported file format.
── Error ('test-readwritemagpie.R:88:3'): handling of spatial data works ───────
Error: [rast] cannot open this file as a SpatRaster: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-magclass/R-magclass/work/.tmp/RtmpZYFqNa/test.nc
Backtrace:
▆
1. ├─testthat::expect_silent(write.magpie(m05, file.path(td, "test.nc"))) at test-readwritemagpie.R:88:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─magclass::write.magpie(m05, file.path(td, "test.nc"))
10. ├─magclass:::suppressSpecificWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. ├─terra::writeCDF(...)
13. └─terra::writeCDF(...)
14. └─terra (local) .local(x, filename, ...)
15. ├─terra::rast(filename)
16. └─terra::rast(filename)
17. └─terra (local) .local(x, ...)
18. └─terra:::messages(r, "rast")
19. └─terra:::error(f, x@ptr$getError())
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 740 ]
Error: Test failures
Execution halted
There is also an error in vignettes:
---> Testing R-magclass
Executing: cd "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-magclass/R-magclass/work/magclass" && /opt/local/bin/R CMD check ./magclass_6.13.2.tar.gz --no-manual --no-build-vignettes
* using log directory ‘/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-magclass/R-magclass/work/magclass/magclass.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: powerpc-apple-darwin10.0.0d2 (32-bit)
* R was compiled by
gcc-mp-13 (MacPorts gcc13 13.2.0_4+stdlib_flag) 13.2.0
GNU Fortran (MacPorts gcc13 13.2.0_4+stdlib_flag) 13.2.0
* running under: OS X Snow Leopard 10.6
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘magclass/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘magclass’ version ‘6.13.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘magclass’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
9. └─magclass::write.magpie(m05, file.path(td, "test.nc"))
10. ├─magclass:::suppressSpecificWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. ├─terra::writeCDF(...)
13. └─terra::writeCDF(...)
14. └─terra (local) .local(x, filename, ...)
15. ├─terra::rast(filename)
16. └─terra::rast(filename)
17. └─terra (local) .local(x, ...)
18. └─terra:::messages(r, "rast")
19. └─terra:::error(f, x@ptr$getError())
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 740 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
‘magclass-concept.Rmd’ using ‘UTF-8’... OK
‘magclass-expansion.Rmd’ using ‘UTF-8’... failed
‘magclass.Rmd’ using ‘UTF-8’... OK
‘magclass6.Rmd’ using ‘UTF-8’... OK
ERROR
Errors in running code in vignettes:
when running code in ‘magclass-expansion.Rmd’
...
AAA.EUR 306419.5 423877.5 562607.3 686632.2 785085.5 853625.1
> options(magclass_setMatching = TRUE)
> head(a * b)
When sourcing ‘magclass-expansion.R’:
Error: Identical set names but different content. Correct set names!
Execution halted
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 2 ERRORs
This is v. 6.10.0.