Closed cerabinowitz closed 2 weeks ago
Hi -- no, PINDER does not provide any models for co-folding or docking inference. It provides a dataset and framework for training and evaluating new methods with a particular attention to data splits to minimize information leakage and maximize generalizability.
We have provided initial templates as inspiration for how we ran the physics-based methods evaluated in the benchmark included in our publication. Feel free to check out the pinder.methods
package if that is of interest.
Hi, I’m interested in whether PINDER can predict interactions between two sequences or structures. Is there a method or feature within PINDER for this? Any guidance or insights would be appreciated. Thanks!