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pinellolab / CRISPR-millipede-target

Calculate the enrichment scores of CRISPR alleles and variants from direct target amplicon-sequencing data using Bayesian linear regression model "millipede".
GNU Affero General Public License v3.0
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polyagamma issue #2

Closed kaplans1 closed 1 month ago

kaplans1 commented 2 months ago

Hello,

When trying to install with "pip install crispr-millipede" I consistently get the issue "ModuleNotFoundError: No module named 'distutils.msvccompiler'

I've tried a handful of different python versions within virtual environments, as well as within a WSL system.

Looks like a cool tool, was hoping to try it out.

Thank You, Sam

doczmp commented 1 month ago

Hi Sam,

Thank you for your interest in our tool. We have updated installation instructions in the read me. Could you try installing PyTorch first and then try installing the CRISPR-Millipede package with pip. Also try using Python 3.10. Let me know if that works!

Best, Zain

kaplans1 commented 1 month ago

Thank you - resolved!