custom plot script - Githubissues

xguo-nveloptx commented 3 months ago

Describe the bug First of all, thanks for offering this script. I've used this script before and it outputs the AGCT in each row. But the new script doesn't do that any more, only output something seems to be color blocks. I wonder why. Thanks

Expected behavior

To reproduce python plotCustomAllelePlot.py \ --CRISPResso2_folder ${input_folder} \ --output_root ${out_plot} \ --save_png \ --plot_center $center \ --plot_left $left \ --plot_right $right

Debug output Paste the entire output when you run CRISPResso with the flag --debug.

Colelyman commented 3 months ago

I bet that you are experiencing issue #384. You can either install current master branch with the fix, or install an earlier version of matplotlib. Let us know if this doesn't work!

xguo-nveloptx commented 3 months ago

Thank you! Fixed!

From: Cole Lyman @.> Date: Wednesday, March 27, 2024 at 7:39 PM To: pinellolab/CRISPResso2 @.> Cc: Xiaoyun Guo @.>, Author @.> Subject: Re: [pinellolab/CRISPResso2] custom plot script (Issue #401) You don't often get email from @.*** Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification

I bet that you are experiencing issue #384https://github.com/pinellolab/CRISPResso2/issues/384. You can either install current master branch with the fix, or install an earlier version of matplotlib. Let us know if this doesn't work!

— Reply to this email directly, view it on GitHubhttps://github.com/pinellolab/CRISPResso2/issues/401#issuecomment-2024158025, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BDJ64ZPKCAZSFIYKCWG6JULY2NKDDAVCNFSM6AAAAABFLZJEHGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMRUGE2TQMBSGU. You are receiving this because you authored the thread.Message ID: @.***>

xguo-nveloptx commented 3 months ago

fixed

pinellolab / CRISPResso2

custom plot script #401