Showing sgRNA sequences on hover in CRISPRessoPro

[Colelyman]

• Sam/try plots (#71)

• Fix batch mode pandas warning. (#70)

• refactor to call method on DataFrame, rather than Series. Removes warning.

• Fix pandas future warning in CRISPRessoWGS

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• Functional

• Cole/fix status file name (#69)

• Update config file logging messages

This removes printing the exception (which is essentially a duplicate), and adds a condition if no config file was provided. Also changes json to config so that it is more clear.

• Fix divide by zero when no amplicons are present in Batch mode

• Don't append file_prefix to status file name

• Place status files in output directories

• Update tests branch for file_prefix addition

• Load D3 and plotly figures with pro with multiple amplicons

• Update batch

• Fix bug in CRISPRessoCompare with pointing to report datas with file_prefix

Before this fix, when using a file_prefix the second run that was compared would not be displayed as a data in the first figure of the report.

• Import CRISPRessoPro instead of importing the version

When installed via conda, the version is not available

• Remove get_amplicon_output unused function from CRISPRessoCompare

Also remove unused argparse import

• Implement get_matching_allele_files in CRISPRessoCompare and accompanying unit tests

• Allow for matching of multiple guides in the same amplicon

• Fix pandas FutureWarning

• Change test branch back to master

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• Try catch all futures

• Fix test fail plots

• Point test to try-plots

• Fix d3 not showing and plotly mixing with matplotlib

• Use logger for warnings and debug statements

• Point tests back at master

---

• Sam/fix plots (#72)

• Fix batch mode pandas warning. (#70)

• refactor to call method on DataFrame, rather than Series. Removes warning.

• Fix pandas future warning in CRISPRessoWGS

---

• Functional

• Cole/fix status file name (#69)

• Update config file logging messages

This removes printing the exception (which is essentially a duplicate), and adds a condition if no config file was provided. Also changes json to config so that it is more clear.

• Fix divide by zero when no amplicons are present in Batch mode

• Don't append file_prefix to status file name

• Place status files in output directories

• Update tests branch for file_prefix addition

• Load D3 and plotly figures with pro with multiple amplicons

• Update batch

• Fix bug in CRISPRessoCompare with pointing to report datas with file_prefix

Before this fix, when using a file_prefix the second run that was compared would not be displayed as a data in the first figure of the report.

• Import CRISPRessoPro instead of importing the version

When installed via conda, the version is not available

• Remove get_amplicon_output unused function from CRISPRessoCompare

Also remove unused argparse import

• Implement get_matching_allele_files in CRISPRessoCompare and accompanying unit tests

• Allow for matching of multiple guides in the same amplicon

• Fix pandas FutureWarning

• Change test branch back to master

---

• Try catch all futures

• Fix test fail plots

• Fix d3 not showing and plotly mixing with matplotlib

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• Remove token from integration tests file

• Provide sgRNA_sequences to plot_nucleotide_quilt plots

• Passing sgRNA_sequences to plot

• Refactor check for determining when to use CRISPREssoPro or matplotlib for Batch plots

• Add max-height to Batch report samples

• Change testing branch

• Fix wrong check for large Batch plots

• Update integration_tests.yml to point back at master

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