This PR addresses the recent change with the release of numpy==2.0.0, where it seems that np.int_t was deprecated.
This PR also updates how include_idxs and exclude_idxs are output, because now with numpy==2.0.0 the integers will be printed out with their types (e.g. np.int64(32) vs 32 in previous versions). No include_idxs and exclude_idxs are vanilla Python lists with vanilla Python ints, with the added benefit of more consistent output in CRISPResso_reference_info.txt (see: https://github.com/edilytics/CRISPResso2_tests/pull/37).
Should only be merged in after the corresponding test branch.
This PR addresses the recent change with the release of
numpy==2.0.0, where it seems thatnp.int_twas deprecated.This PR also updates how
include_idxsandexclude_idxsare output, because now withnumpy==2.0.0the integers will be printed out with their types (e.g.np.int64(32)vs32in previous versions). Noinclude_idxsandexclude_idxsare vanilla Python lists with vanilla Pythonints, with the added benefit of more consistent output inCRISPResso_reference_info.txt(see: https://github.com/edilytics/CRISPResso2_tests/pull/37).Should only be merged in after the corresponding test branch.