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gnomAD-converter error in v2.1.5 (conda isntall) : pysam missing in the conda build recipe #63

Open mzhibo opened 2 months ago

mzhibo commented 2 months ago

I installed the newest v2.1.5 version and tested the new gnomAD-converter function for gnomAD v4 VCFs and noticed a bug:

 crisprme.py gnomAD-converter --gnomAD_VCFdir . --samplesID ../../../../samplesIDs/hg38_gnomAD.samplesID.txt --keep
Traceback (most recent call last):
  File "/mnt/efs/home/zma/anaconda3/envs/crisprme2.1.5/opt/crisprme/src/convert_gnomAD_vcfs.py", line 13, in <module>
    import pysam
ModuleNotFoundError: No module named 'pysam'

installing the pysam solved this issue