pinellolab / DNA-Diffusion

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
https://pinellolab.github.io/DNA-Diffusion/
Other
357 stars 49 forks source link

chore(deps): update dependency ruff to v0.1.5 #260

Closed renovate[bot] closed 10 months ago

renovate[bot] commented 10 months ago

Mend Renovate

This PR contains the following updates:

Package Change Age Adoption Passing Confidence
ruff (source, changelog) ==0.1.4 -> ==0.1.5 age adoption passing confidence

Release Notes

astral-sh/ruff (ruff) ### [`v0.1.5`](https://togithub.com/astral-sh/ruff/blob/HEAD/CHANGELOG.md#015) [Compare Source](https://togithub.com/astral-sh/ruff/compare/v0.1.4...v0.1.5) ##### Preview features - \[`flake8-bandit`] Implement `mako-templates` (`S702`) ([#​8533](https://togithub.com/astral-sh/ruff/pull/8533)) - \[`flake8-trio`] Implement `TRIO105` ([#​8490](https://togithub.com/astral-sh/ruff/pull/8490)) - \[`flake8-trio`] Implement `TRIO109` ([#​8534](https://togithub.com/astral-sh/ruff/pull/8534)) - \[`flake8-trio`] Implement `TRIO110` ([#​8537](https://togithub.com/astral-sh/ruff/pull/8537)) - \[`flake8-trio`] Implement `TRIO115` ([#​8486](https://togithub.com/astral-sh/ruff/pull/8486)) - \[`refurb`] Implement `type-none-comparison` (`FURB169`) ([#​8487](https://togithub.com/astral-sh/ruff/pull/8487)) - Flag all comparisons against builtin types in `E721` ([#​8491](https://togithub.com/astral-sh/ruff/pull/8491)) - Make `SIM118` fix as safe when the expression is a known dictionary ([#​8525](https://togithub.com/astral-sh/ruff/pull/8525)) ##### Formatter - Fix multiline lambda expression statement formatting ([#​8466](https://togithub.com/astral-sh/ruff/pull/8466)) ##### CLI - Add hidden `--extension` to override inference of source type from file extension ([#​8373](https://togithub.com/astral-sh/ruff/pull/8373)) ##### Configuration - Account for selector specificity when merging `extend_unsafe_fixes` and `override extend_safe_fixes` ([#​8444](https://togithub.com/astral-sh/ruff/pull/8444)) - Add support for disabling cache with `RUFF_NO_CACHE` environment variable ([#​8538](https://togithub.com/astral-sh/ruff/pull/8538)) ##### Bug fixes - \[`E721`] Flag comparisons to `memoryview` ([#​8485](https://togithub.com/astral-sh/ruff/pull/8485)) - Allow collapsed-ellipsis bodies in other statements ([#​8499](https://togithub.com/astral-sh/ruff/pull/8499)) - Avoid `D301` autofix for `u` prefixed strings ([#​8495](https://togithub.com/astral-sh/ruff/pull/8495)) - Only flag `flake8-trio` rules when `trio` import is present ([#​8550](https://togithub.com/astral-sh/ruff/pull/8550)) - Reject more syntactically invalid Python programs ([#​8524](https://togithub.com/astral-sh/ruff/pull/8524)) - Avoid raising `TRIO115` violations for `trio.sleep(...)` calls with non-number values ([#​8532](https://togithub.com/astral-sh/ruff/pull/8532)) - Fix `F841` false negative on assignment to multiple variables ([#​8489](https://togithub.com/astral-sh/ruff/pull/8489)) ##### Documentation - Fix link to isort `known-first-party` ([#​8562](https://togithub.com/astral-sh/ruff/pull/8562)) - Add notes on fix safety to a few rules ([#​8500](https://togithub.com/astral-sh/ruff/pull/8500)) - Add missing toml config tabs ([#​8512](https://togithub.com/astral-sh/ruff/pull/8512)) - Add instructions for configuration of Emacs ([#​8488](https://togithub.com/astral-sh/ruff/pull/8488)) - Improve detail link contrast in dark mode ([#​8548](https://togithub.com/astral-sh/ruff/pull/8548)) - Fix typo in example ([#​8506](https://togithub.com/astral-sh/ruff/pull/8506)) - Added tabs for configuration files in the documentation ([#​8480](https://togithub.com/astral-sh/ruff/pull/8480)) - Recommend `project.requires-python` over `target-version` ([#​8513](https://togithub.com/astral-sh/ruff/pull/8513)) - Add singleton escape hatch to `B008` documentation ([#​8501](https://togithub.com/astral-sh/ruff/pull/8501)) - Fix tab configuration docs ([#​8502](https://togithub.com/astral-sh/ruff/pull/8502))

Configuration

📅 Schedule: Branch creation - At any time (no schedule defined), Automerge - At any time (no schedule defined).

🚦 Automerge: Disabled by config. Please merge this manually once you are satisfied.

â™» Rebasing: Whenever PR becomes conflicted, or you tick the rebase/retry checkbox.

🔕 Ignore: Close this PR and you won't be reminded about this update again.



This PR has been generated by Mend Renovate. View repository job log here.

codecov[bot] commented 10 months ago

Codecov Report

Merging #260 (33c3b0c) into main (cff0f40) will not change coverage. The diff coverage is n/a.

@@           Coverage Diff           @@
##             main     #260   +/-   ##
=======================================
  Coverage   37.00%   37.00%           
=======================================
  Files          23       23           
  Lines        1481     1481           
  Branches      202      202           
=======================================
  Hits          548      548           
  Misses        925      925           
  Partials        8        8