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pinellolab / STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
http://stream.pinellolab.org
GNU Affero General Public License v3.0
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multicore option #102

Open wajm opened 3 years ago

wajm commented 3 years ago

I want to run about 50~ 200k cells trajectory. is there multicore or multithreading option?

huidongchen commented 3 years ago

Not all the steps support multicores but specifying the parameter n_jobs inst.dimension_reduction() should help speed up the slowest step. Similarly, you can find this parameter n_jobs in other functions to enable the parallel processing.