Closed l-magnificence closed 2 years ago
when I run st.plot_stream(adata,root='S4',color=['Phase'],factor_min_win=1.5), error occur:
ValueError Traceback (most recent call last) /tmp/ipykernel_90883/1597493436.py in <module> 1 #stream plots ----> 2 st.plot_stream(adata,root='S4',color=['Phase'],factor_min_win=1.5) ~/.conda/envs/env_stream/lib/python3.7/site-packages/stream/core.py in plot_stream(adata, root, color, preference, dist_scale, factor_num_win, factor_min_win, factor_width, factor_nrow, factor_ncol, log_scale, factor_zoomin, fig_size, fig_legend_order, fig_legend_ncol, vmin, vmax, pad, w_pad, h_pad, save_fig, fig_path, fig_format) 3129 cal_stream_polygon_string(adata,dict_ann,root=root,preference=preference,dist_scale=dist_scale, 3130 factor_num_win=factor_num_win,factor_min_win=factor_min_win,factor_width=factor_width, -> 3131 log_scale=log_scale,factor_zoomin=factor_zoomin) 3132 dict_plot['string'] = [dict_verts,dict_extent] 3133 ~/.conda/envs/env_stream/lib/python3.7/site-packages/stream/extra.py in cal_stream_polygon_string(adata, dict_ann, root, preference, dist_scale, factor_num_win, factor_min_win, factor_width, log_scale, factor_zoomin) 927 if x in nx.get_edge_attributes(flat_tree,'id').values(): 928 id_cells = np.where(df_stream['branch_id']==x)[0] --> 929 df_stream.loc[df_stream.index[id_cells],'edge'] = [x] 930 df_stream.loc[df_stream.index[id_cells],'lam_ordered'] = df_stream.loc[df_stream.index[id_cells],'branch_lam'] 931 else: ~/.conda/envs/env_stream/lib/python3.7/site-packages/pandas/core/indexing.py in __setitem__(self, key, value) 721 722 iloc = self if self.name == "iloc" else self.obj.iloc --> 723 iloc._setitem_with_indexer(indexer, value, self.name) 724 725 def _validate_key(self, key, axis: int): ~/.conda/envs/env_stream/lib/python3.7/site-packages/pandas/core/indexing.py in _setitem_with_indexer(self, indexer, value, name) 1728 if take_split_path: 1729 # We have to operate column-wise -> 1730 self._setitem_with_indexer_split_path(indexer, value, name) 1731 else: 1732 self._setitem_single_block(indexer, value, name) ~/.conda/envs/env_stream/lib/python3.7/site-packages/pandas/core/indexing.py in _setitem_with_indexer_split_path(self, indexer, value, name) 1767 1768 elif np.ndim(value) == 2: -> 1769 self._setitem_with_indexer_2d_value(indexer, value) 1770 1771 elif len(ilocs) == 1 and lplane_indexer == len(value) and not is_scalar(pi): ~/.conda/envs/env_stream/lib/python3.7/site-packages/pandas/core/indexing.py in _setitem_with_indexer_2d_value(self, indexer, value) 1828 if len(ilocs) != value.shape[1]: 1829 raise ValueError( -> 1830 "Must have equal len keys and value when setting with an ndarray" 1831 ) 1832 ValueError: Must have equal len keys and value when setting with an ndarray
What dose this mean? How to solve it? Thanks!
install the latest version can solve it
when I run st.plot_stream(adata,root='S4',color=['Phase'],factor_min_win=1.5), error occur:
What dose this mean? How to solve it? Thanks!