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pinellolab / STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
http://stream.pinellolab.org
GNU Affero General Public License v3.0
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jaspar2016 #66

Open Brawni opened 4 years ago

Brawni commented 4 years ago

Hello there,

Thanks for providing this amazing tool for single-cell analysis..I am running the stream_atac function on command line but it says that it cannot install the R package JASPAR2016. I can install it myself but is there a specification to use the more updated version which I have already installed (JASPAR2020)?

Thanks!

huidongchen commented 4 years ago

Hi, Thanks for trying STREAM and your feedback! Unfortunately JASPAR database is hardcoded currently (due to the concerns about software compatibility). But I will try to add the option of JASPAR version in the next release.