Hello,

I am having difficulties saving the figure generated by Dictys.

For exemple, for Heatmap of regulation strengths between select TFs and their top targets in select cell types.

I tried to save using: fig,fig_colorbar,net=fig_heatmap_top(d0,tf,ntop=ntop,direction=direction,aspect=1,gann='all') plt.savefig("figname.png") but this is only saving the legend.

Could you please help me to find the way to save the figure ?

For :

TF discovery based on 4 patterns of highly variable regulatory activity over developmental trajectory (discovery.ipynb)

I used:

Value range for coloring

vrange={ 'Terminal logFC':[-4.5,4.5], 'Transient logFC':[-1.5,1.5], 'Switching time':[0.2,0.8], }

for branchname in branches: print(branchname) figs=d0.draw_discover(*branches[branchname],ntops=(12,12,2,2),vrange=vrange) plt.show() for i,fig in enumerate(figs): fig[0].savefig('TF_Discovery--branch{}-fig{}.png'.format(branchname,i), bbox_inches='tight', dpi = 300)

But I am not sure I can use this here.

Maybe it could be useful to add exemples for saving this figure in the notebooks ?

Thanks a lot !

pinellolab / dictys

Help with saving figures #15

Value range for coloring