Four multiome samples, 2 different treatment conditions

pinellolab / dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

GNU Affero General Public License v3.0

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Four multiome samples, 2 different treatment conditions #45

Closed kfenggg closed 9 months ago

kfenggg commented 9 months ago

Hello,

Thank you so much for developing this tool! I am interested in running GRN inference on 4 multiome samples (2 treated, 2 untreated). What is the best way to run your pipeline on all 4 samples together? Ie. Should I integrate with seurat, extract gex mtx and create an ATAC bed and convert to bams?

Thanks!

Kev

lingfeiwang commented 9 months ago

Hi Kev,

You can follow "How do I use Dictys on multiple samples?" in FAQ. Let us know if you have further questions.

Lingfei