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pinellolab / haystack_bio

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
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replicates with haystack_bio #4

Open mistrm82 opened 6 years ago

mistrm82 commented 6 years ago

How does haystack_bio handle replicates? For example, if each celltype in the example had 3 replicates therefore 3 input BAMs can we still run this?

rfarouni commented 6 years ago

As of yet, it does not handle replicates. You would need to merge them. Of course you can also treat the 3 replicates as different cell types and merge the specific regions that are consistent across all three.