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pinellolab / simba

SIMBA: SIngle-cell eMBedding Along with features
https://simba-bio.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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No module named 'torchbiggraph.converters.importers' #22

Closed yoeHuuui closed 11 months ago

yoeHuuui commented 11 months ago

simba is a very useful tool for single-cell data analysis! However, when I attempted to install simba using pip in Python 3.8.0, I encountered the following error:

>>> import simba as si
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/miniconda3/envs/simba/lib/python3.8/site-packages/simba/__init__.py", line 5, in <module>
    from . import tools as tl
  File "/home/miniconda3/envs/simba/lib/python3.8/site-packages/simba/tools/__init__.py", line 12, in <module>
    from ._pbg import (
  File "/home/miniconda3/envs/simba/lib/python3.8/site-packages/simba/tools/_pbg.py", line 14, in <module>
    from torchbiggraph.converters.importers import (
ModuleNotFoundError: No module named 'torchbiggraph.converters.importers'

It seems that this issue is related to torchbiggraph. My torchbiggraph version is v1.0.0. What is the version of torchbiggraph in simba, or how can I resolve this issue? Thank you very much!

yoeHuuui commented 11 months ago

I have solved the problem by using the following command: pip install git+https://github.com/pinellolab/simba_pbg Very nice tool!