pints-team / method-merge-tests

Provides a house for test results for samplers when they are merged into PINTS.

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Who owns what method? #1

Open ben18785 opened 3 years ago

ben18785 commented 3 years ago

Non-gradient

[x] Differential evolution: done #9
[ ] DRAM: @ben18785 ? Very old PR #35
[x] DREAM: done #10
[x] Emcee hammer: done #12
[x] Haario AC: done #6
[x] Haario-Bardenet AC: done #6
[ ] Metropolis: PR by @chonlei - changes requested #17
[x] Population: done #23
[ ] Rao-Blackwell AC: @Rebecca-Rumney
[x] Slice doubling: done #31
[ ] Slice stepout: PR by @FarmHJ #27

Gradient

[ ] HMC: PR by @FarmHJ #39
[ ] MALA: PR by @fcooper8472 #25
[x] NUTS: @I-Bouros #29
[x] Monomial gamma HMC: done #12
[x] Relativistic HMC: done #21
[ ] Slice rank shrinking:

Nested

[ ] Ellipsoid
[ ] Rejection

ABC - not for paper

[ ] rejection
[ ] smc

Stochastic optimisers

[x] CMAES: done #24
[x] CMAES bare bones implementation: done #24
[ ] PSO
[x] SNES: done #34
[ ] XNES: PR by @MichaelClerx in #33

Deterministic optimisers - not for paper

Ee do a notebook, but no statistical tests. Instead, write good value-based unit tests: start from a known position, check that you take the correct step.
[ ] Adam
[x] Gradient descent done #37
[ ] irpropmin
[ ] Nelder-mead

MichaelClerx commented 3 years ago

Don't forget the optimisers

ben18785 commented 3 years ago

You're right: you own those :)

optimisers @MichaelClerx

(I was thinking we'd cross that bridge after we'd got the samplers sorted?)

martinjrobins commented 3 years ago

stupid question, how do you run the existing notebooks, I'm running the hario bardenet one and get the error:

ModuleNotFoundError: No module named 'pints.functionaltests'

were are pints.functionaltests located?

MichaelClerx commented 3 years ago

You need this branch: https://github.com/pints-team/pints/pull/1295

fcooper8472 commented 3 years ago

They are currently in a branch: https://github.com/pints-team/pints/pull/1295