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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/taxsbp parse pandas df #162

Closed pirovc closed 3 years ago

codecov-io commented 3 years ago

Codecov Report

Merging #162 (0c964a0) into dev (d56527a) will decrease coverage by 0.07%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##              dev     #162      +/-   ##
==========================================
- Coverage   77.63%   77.56%   -0.08%     
==========================================
  Files          22       22              
  Lines        2513     2509       -4     
==========================================
- Hits         1951     1946       -5     
- Misses        562      563       +1
Impacted Files Coverage Δ
src/ganon/bins.py 84.31% <100.00%> (-1.97%) :arrow_down:
src/ganon/build_update.py 65.47% <100.00%> (+0.17%) :arrow_up:
src/ganon/seqinfo.py 72.72% <100.00%> (-1.75%) :arrow_down:
src/ganon/tax.py 87.35% <0.00%> (-1.15%) :arrow_down:

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