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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
87 stars 13 forks source link

ganon version 1.1.0 #187

Closed pirovc closed 2 years ago

pirovc commented 2 years ago
codecov-commenter commented 2 years ago

Codecov Report

Merging #187 (a132069) into master (2154627) will decrease coverage by 3.26%. The diff coverage is 68.68%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #187      +/-   ##
==========================================
- Coverage   78.09%   74.83%   -3.27%     
==========================================
  Files          22       11      -11     
  Lines        2671     1371    -1300     
==========================================
- Hits         2086     1026    -1060     
+ Misses        585      345     -240
Impacted Files Coverage Δ
src/utils/include/utils/LCA.hpp 96.77% <ø> (ø)
src/ganon-build/include/ganon-build/Config.hpp 40.20% <17.24%> (-4.80%) :arrow_down:
...c/ganon-classify/include/ganon-classify/Config.hpp 50.82% <47.82%> (-0.46%) :arrow_down:
src/ganon-build/GanonBuild.cpp 78.70% <71.75%> (+3.97%) :arrow_up:
src/ganon-classify/GanonClassify.cpp 83.86% <88.61%> (-1.29%) :arrow_down:
src/ganon-build/CommandLineParser.cpp 88.00% <92.30%> (+0.12%) :arrow_up:
src/ganon-classify/CommandLineParser.cpp 87.35% <95.45%> (+2.83%) :arrow_up:
src/ganon/bins.py
src/ganon/build_update.py
... and 10 more

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