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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

log files #188

Closed rjsorr closed 1 year ago

rjsorr commented 2 years ago

I am running ganon (build at present) through a remote connection to a server so I don't always have possibilty to see the screen log. Sometimes the program exits and as such it is difficult to troubleshoot as to why. Is it possible that the log can be written to a file?

pirovc commented 2 years ago

It is actually planned for the next release to have a log file option. For now you can use bash redirection ganon classify ... > out.log 2>&1 to get everything written into out.log

rjsorr commented 2 years ago

thanks