Closed nealplatt closed 2 years ago
Hi @nealplatt, thanks for reporting. Newer versions of pandas are throwing this warning and it's indeed annoying. It already got fixed in the new release (1.2.0) which is going to be released soon. For now, one can suppress such warning if it's causing any trouble: https://stackoverflow.com/questions/15777951/how-to-suppress-pandas-future-warning
Hi @pirovc
I am using the bioconda version of ganon and am getting some strange results and am trying to trouble shoot through them. I have noticed that when I use
ganon build
I get the following error./master/nplatt/anaconda3/envs/ganon/lib/python3.9/site-packages/ganon/seqinfo.py:32: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead. self.seqinfo = self.seqinfo.append(df, ignore_index=True, sort=False)
and it repeats several thousand times....
This seems like an easy fix and shouldn't be causing any major problems but wanted to make note of it for you. I tried messing around with the code and changing it to the new
pd.concat()
but crashed things every time I tried.Relevant portions of my env are:
Thanks