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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/codecov target tests #212

Closed pirovc closed 2 years ago

codecov-commenter commented 2 years ago

Codecov Report

Merging #212 (3820b3b) into dev (5f25fd6) will increase coverage by 5.51%. The diff coverage is n/a.

@@            Coverage Diff             @@
##              dev     #212      +/-   ##
==========================================
+ Coverage   76.58%   82.10%   +5.51%     
==========================================
  Files          18       22       +4     
  Lines        2605     2732     +127     
==========================================
+ Hits         1995     2243     +248     
+ Misses        610      489     -121
Impacted Files Coverage Δ
src/ganon/util.py 75.86% <ø> (-10.35%) :arrow_down:
src/ganon/tax_util.py 67.08% <0.00%> (-30.44%) :arrow_down:
src/ganon/report.py 85.25% <0.00%> (-0.47%) :arrow_down:
src/ganon/build_update.py 64.55% <0.00%> (-0.38%) :arrow_down:
src/ganon-classify/CommandLineParser.cpp 80.55% <0.00%> (ø)
src/ganon-build/main.cpp 100.00% <0.00%> (ø)
src/ganon-build/CommandLineParser.cpp 88.23% <0.00%> (ø)
src/ganon-classify/main.cpp 100.00% <0.00%> (ø)
src/ganon/ganon.py 80.00% <0.00%> (+2.85%) :arrow_up:
... and 8 more

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