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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
87 stars 13 forks source link

Feature/report top percentile #220

Closed pirovc closed 1 year ago

pirovc commented 1 year ago

Implement top-percentile filter on ganon report. Applied for all default ranks.

codecov-commenter commented 1 year ago

Codecov Report

Merging #220 (6a70d87) into dev (a35f2a1) will increase coverage by 0.08%. The diff coverage is 89.13%.

@@            Coverage Diff             @@
##              dev     #220      +/-   ##
==========================================
+ Coverage   84.29%   84.37%   +0.08%     
==========================================
  Files          22       22              
  Lines        2929     2944      +15     
==========================================
+ Hits         2469     2484      +15     
  Misses        460      460
Impacted Files Coverage Δ
src/ganon/report.py 88.98% <88.37%> (+0.47%) :arrow_up:
src/ganon/config.py 79.45% <100.00%> (+0.06%) :arrow_up:

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