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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

ganon version 1.3.0 #226

Closed pirovc closed 1 year ago

pirovc commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Merging #226 (060d609) into master (db3e05f) will increase coverage by 3.65%. The diff coverage is 93.03%.

:exclamation: Current head 060d609 differs from pull request most recent head 46ce330. Consider uploading reports for the commit 46ce330 to get more accurate results

@@            Coverage Diff             @@
##           master     #226      +/-   ##
==========================================
+ Coverage   83.17%   86.82%   +3.65%     
==========================================
  Files          22       22              
  Lines        2734     2999     +265     
==========================================
+ Hits         2274     2604     +330     
+ Misses        460      395      -65
Impacted Files Coverage Δ
...c/ganon-classify/include/ganon-classify/Config.hpp 70.00% <ø> (ø)
src/ganon/classify.py 89.47% <ø> (ø)
src/ganon/tax_util.py 72.50% <81.48%> (+5.41%) :arrow_up:
src/ganon/report.py 92.30% <95.49%> (+7.05%) :arrow_up:
src/ganon/config.py 81.54% <96.36%> (+2.53%) :arrow_up:
src/ganon-classify/CommandLineParser.cpp 86.11% <100.00%> (ø)
src/ganon/build_update.py 87.94% <100.00%> (+23.01%) :arrow_up:
src/ganon-classify/GanonClassify.cpp 91.42% <0.00%> (+0.76%) :arrow_up:
... and 3 more

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