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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

ganon version 1.5.0 #238

Closed pirovc closed 1 year ago

pirovc commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Merging #238 (5f40628) into master (d851f0a) will decrease coverage by 0.45%. The diff coverage is 78.91%.

:exclamation: Current head 5f40628 differs from pull request most recent head ea33953. Consider uploading reports for the commit ea33953 to get more accurate results

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@@            Coverage Diff             @@
##           master     #238      +/-   ##
==========================================
- Coverage   87.66%   87.22%   -0.45%     
==========================================
  Files          22       23       +1     
  Lines        3041     3272     +231     
==========================================
+ Hits         2666     2854     +188     
- Misses        375      418      +43
Impacted Files Coverage Δ
src/ganon/build_update.py 83.54% <51.42%> (-4.44%) :arrow_down:
src/ganon-classify/GanonClassify.cpp 90.41% <60.86%> (-1.02%) :arrow_down:
src/ganon/config.py 79.38% <64.78%> (-2.28%) :arrow_down:
...c/ganon-classify/include/ganon-classify/Config.hpp 70.19% <80.00%> (+0.19%) :arrow_up:
src/ganon/classify.py 86.84% <86.66%> (-2.64%) :arrow_down:
src/ganon/reassign.py 94.95% <94.95%> (ø)
src/ganon-classify/CommandLineParser.cpp 89.33% <100.00%> (+3.22%) :arrow_up:
src/ganon/ganon.py 88.88% <100.00%> (+3.17%) :arrow_up:
src/ganon/report.py 92.32% <100.00%> (+1.34%) :arrow_up:
src/ganon/util.py 89.65% <100.00%> (ø)

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