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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/filter seq len build #249

Closed pirovc closed 1 year ago

codecov-commenter commented 1 year ago

Codecov Report

Merging #249 (c930e3d) into dev (af00a99) will decrease coverage by 14.09%. The diff coverage is 62.37%.

:exclamation: Current head c930e3d differs from pull request most recent head 230420d. Consider uploading reports for the commit 230420d to get more accurate results

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@@             Coverage Diff             @@
##              dev     #249       +/-   ##
===========================================
- Coverage   77.66%   63.57%   -14.09%     
===========================================
  Files          22       23        +1     
  Lines        2512     3325      +813     
===========================================
+ Hits         1951     2114      +163     
- Misses        561     1211      +650
Impacted Files Coverage Δ
...classify/hierarchical_interleaved_bloom_filter.hpp 0.00% <0.00%> (ø)
src/ganon/report.py 5.29% <5.23%> (-83.30%) :arrow_down:
src/ganon/classify.py 13.15% <5.88%> (-80.96%) :arrow_down:
src/ganon/reassign.py 6.72% <6.72%> (ø)
src/ganon-build/CommandLineParser.cpp 42.10% <37.93%> (-45.78%) :arrow_down:
src/ganon-classify/CommandLineParser.cpp 39.74% <54.83%> (-42.31%) :arrow_down:
src/ganon/build_update.py 59.48% <58.86%> (-6.00%) :arrow_down:
src/ganon-build/include/ganon-build/Config.hpp 65.07% <61.11%> (+19.62%) :arrow_up:
src/ganon/tax_util.py 64.58% <64.58%> (ø)
src/ganon/ganon.py 77.77% <72.00%> (-16.17%) :arrow_down:
... and 9 more

... and 4 files with indirect coverage changes

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