pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

ganon v1.6.0 #250

Closed pirovc closed 1 year ago

pirovc commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Merging #250 (15a05a7) into master (5f40628) will decrease coverage by 0.28%. The diff coverage is 85.93%.

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@@            Coverage Diff             @@
##           master     #250      +/-   ##
==========================================
- Coverage   87.22%   86.94%   -0.28%     
==========================================
  Files          23       23              
  Lines        3272     3325      +53     
==========================================
+ Hits         2854     2891      +37     
- Misses        418      434      +16     
Impacted Files Coverage Δ
...c/ganon-classify/include/ganon-classify/Config.hpp 70.19% <ø> (ø)
src/ganon-classify/CommandLineParser.cpp 88.46% <57.14%> (-0.88%) :arrow_down:
src/ganon-build/GanonBuild.cpp 94.86% <83.33%> (-1.45%) :arrow_down:
src/ganon/config.py 79.43% <85.71%> (+0.05%) :arrow_up:
src/ganon-classify/GanonClassify.cpp 89.07% <85.86%> (-1.34%) :arrow_down:
src/ganon-build/CommandLineParser.cpp 89.47% <100.00%> (+0.58%) :arrow_up:
src/ganon-build/include/ganon-build/Config.hpp 65.07% <100.00%> (+0.56%) :arrow_up:
src/ganon/build_update.py 83.60% <100.00%> (+0.05%) :arrow_up:
src/ganon/report.py 92.32% <100.00%> (ø)
src/ganon/util.py 90.32% <100.00%> (+0.66%) :arrow_up:
... and 1 more

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