Closed LilyAnderssonLee closed 1 year ago
It seems like you are using an outdated ganon version that did not support download of databases directly. Please update it to the latest vesion with conda update ganon
to have such functionality.
Thanks! My ganon version is 0.2.3 and it seems like I'm unable to update to the latest version. This could be due to my outdated version of conda. I will get back to you once I've resolved the version issue.
Yeah downloading works now after upgrading the ganon version to 1.6.0. Thanks again.
Hi, I installed ganon through conda and I am having issues to download the databases through this command line.
ganon build --organism-group archaea bacteria fungi viral protozoa human --threads 12 --complete-genomes --db-prefix abfcph_refseq_cg
error message:
ganon: error: unrecognized arguments: --organism-group archaea bacteria fungi viral protozoa human --complete-genomes
I didn't see -g/--organism-group argument in help message of![image](https://github.com/pirovc/ganon/assets/64467552/2766577f-0355-4bae-9544-4a09bf0104a5)
ganon build -h