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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/fpr query #253

Closed pirovc closed 1 year ago

pirovc commented 1 year ago

Implement filtration of mathces by the false positive rate of the query

codecov-commenter commented 1 year ago

Codecov Report

Merging #253 (6a6c852) into dev (af00a99) will increase coverage by 9.16%. Report is 91 commits behind head on dev. The diff coverage is 86.60%.

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@@            Coverage Diff             @@
##              dev     #253      +/-   ##
==========================================
+ Coverage   77.66%   86.83%   +9.16%     
==========================================
  Files          22       23       +1     
  Lines        2512     3379     +867     
==========================================
+ Hits         1951     2934     +983     
+ Misses        561      445     -116
Files Changed Coverage Δ
...classify/hierarchical_interleaved_bloom_filter.hpp 0.00% <0.00%> (ø)
src/ganon-build/include/ganon-build/Config.hpp 65.07% <61.11%> (+19.62%) :arrow_up:
...c/ganon-classify/include/ganon-classify/Config.hpp 68.64% <75.29%> (+18.64%) :arrow_up:
src/ganon/tax_util.py 81.25% <81.25%> (ø)
src/ganon/config.py 79.48% <83.13%> (+1.53%) :arrow_up:
src/ganon/build_update.py 83.60% <83.61%> (+18.12%) :arrow_up:
src/ganon/classify.py 86.84% <85.29%> (-7.28%) :arrow_down:
src/ganon-classify/GanonClassify.cpp 88.88% <86.04%> (+6.06%) :arrow_up:
src/ganon/ganon.py 88.88% <88.00%> (-5.06%) :arrow_down:
src/ganon-classify/CommandLineParser.cpp 88.88% <88.23%> (+6.83%) :arrow_up:
... and 9 more

... and 2 files with indirect coverage changes

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